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Sample GSM1500973 Query DataSets for GSM1500973
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a177c2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a177c2
Sex: male
dna.extraction.method: AllPrep
age: 33
dnamage: 38.8448008
ageaccelerationresidualbasedontrainingandtestdata: -2.292307383
bmi: 25
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 0.90975509
dnamageadjustedagebmigender: -1.40264051
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2735997
cg00000108 0.3596906
cg00000109 0.8717697
cg00000165 0.1486097
cg00000236 0.8143583
cg00000289 0.5940922
cg00000292 0.6421479
cg00000321 0.2151273
cg00000363 0.7052473
cg00000622 0.01984852
cg00000658 0.7666184
cg00000714 0.1696853
cg00000721 0.9129048
cg00000734 0.06000154
cg00000769 0.06609956
cg00000807 0.6803678
cg00000884 0.8310187
cg00000905 0.0861688
cg00000924 0.4728514
cg00000948 0.8578302

Total number of rows: 485577

Table truncated, full table size 10044 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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