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Sample GSM1500972 Query DataSets for GSM1500972
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17722
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17722
Sex: male
dna.extraction.method: AllPrep
age: 46
dnamage: 77.72564189
ageaccelerationresidualbasedontrainingandtestdata: 29.30008333
bmi: 40.2
diseasestatus: NAFLD
nafldactivityscore: 2
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
nas.ballooning: 1
dnamageadjustedagebmi: 29.05031676
dnamageadjustedagebmigender: 26.77468843
smokingstatus: no
smokingpackyears: 4.5
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3225736
cg00000108 0.9138013
cg00000109 0.8187068
cg00000165 0.1887048
cg00000236 0.8078941
cg00000289 0.6361052
cg00000292 0.6398777
cg00000321 0.2591716
cg00000363 0.2078807
cg00000622 0.01746652
cg00000658 0.7512995
cg00000714 0.1713853
cg00000721 0.8658256
cg00000734 0.08685897
cg00000769 0.05509424
cg00000807 0.7389513
cg00000884 0.8277697
cg00000905 0.105199
cg00000924 0.4957401
cg00000948 0.8729563

Total number of rows: 485577

Table truncated, full table size 10038 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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