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Sample GSM1500970 Query DataSets for GSM1500970
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17672
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17672
Sex: male
dna.extraction.method: AllPrep
age: 49
dnamage: 64.2868786
ageaccelerationresidualbasedontrainingandtestdata: 14.17936997
bmi: 48.7
diseasestatus: NAFLD
nafldactivityscore: 2
liversteatosis: 2
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 12.29486692
dnamageadjustedagebmigender: 10.02975445
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2759196
cg00000108 0.9127178
cg00000109 0.8171151
cg00000165 0.1762144
cg00000236 0.8210372
cg00000289 0.5162256
cg00000292 0.6280869
cg00000321 0.2137245
cg00000363 0.2033661
cg00000622 0.01990411
cg00000658 0.7701141
cg00000714 0.1297011
cg00000721 0.8999906
cg00000734 0.06630066
cg00000769 0.02010842
cg00000807 0.6992343
cg00000884 0.8416237
cg00000905 0.0599288
cg00000924 0.5082125
cg00000948 0.8651186

Total number of rows: 485577

Table truncated, full table size 10048 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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