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Sample GSM1500969 Query DataSets for GSM1500969
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a175f2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a175f2
Sex: female
dna.extraction.method: AllPrep
age: 46
dnamage: 62.58352707
ageaccelerationresidualbasedontrainingandtestdata: 14.15796851
bmi: 26.3
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: NA
liverinflammation: NA
fibrosis: 0
nas.ballooning: NA
dnamageadjustedagebmi: 16.2418785
dnamageadjustedagebmigender: 17.9939466
smokingstatus: yes
smokingpackyears: 5
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3075287
cg00000108 0.9139892
cg00000109 0.7752774
cg00000165 0.2168496
cg00000236 0.770354
cg00000289 0.5496938
cg00000292 0.7274991
cg00000321 0.2652077
cg00000363 0.2101612
cg00000622 0.01769017
cg00000658 0.8001169
cg00000714 0.1455927
cg00000721 0.8770378
cg00000734 0.0550644
cg00000769 0.02364848
cg00000807 0.7257296
cg00000884 0.8141366
cg00000905 0.09153356
cg00000924 0.512805
cg00000948 0.831793

Total number of rows: 485577

Table truncated, full table size 10046 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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