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Sample GSM1500968 Query DataSets for GSM1500968
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a175c2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a175c2
Sex: male
dna.extraction.method: AllPrep
age: 21
dnamage: 61.16142907
ageaccelerationresidualbasedontrainingandtestdata: 26.75212121
bmi: 49.7
diseasestatus: NASH
nafldactivityscore: 5
liversteatosis: 3
liverinflammation: 1
fibrosis: 0
nas.ballooning: 1
dnamageadjustedagebmi: 26.63796307
dnamageadjustedagebmigender: 24.30738591
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2577368
cg00000108 0.907163
cg00000109 0.8145091
cg00000165 0.2226633
cg00000236 0.7918613
cg00000289 0.5550793
cg00000292 0.6010069
cg00000321 0.3155626
cg00000363 0.2251198
cg00000622 0.01958888
cg00000658 0.7256562
cg00000714 0.1371927
cg00000721 0.8876381
cg00000734 0.07211049
cg00000769 0.05648286
cg00000807 0.7337177
cg00000884 0.8271417
cg00000905 0.09235863
cg00000924 0.5125241
cg00000948 0.8318875

Total number of rows: 485577

Table truncated, full table size 10041 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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