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Sample GSM1500967 Query DataSets for GSM1500967
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17502
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17502
Sex: male
dna.extraction.method: AllPrep
age: 46
dnamage: 58.88996885
ageaccelerationresidualbasedontrainingandtestdata: 10.4644103
bmi: 64.3
diseasestatus: NAFLD
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 6.168485075
dnamageadjustedagebmigender: 3.902661743
smokingstatus: no
smokingpackyears: 51
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3644394
cg00000108 0.9017783
cg00000109 0.8394818
cg00000165 0.3724961
cg00000236 0.8095844
cg00000289 0.6806974
cg00000292 0.6120739
cg00000321 0.3707597
cg00000363 0.3289481
cg00000622 0.01449912
cg00000658 0.7719894
cg00000714 0.1360843
cg00000721 0.850342
cg00000734 0.07384139
cg00000769 0.0682389
cg00000807 0.7043502
cg00000884 0.7880594
cg00000905 0.07303059
cg00000924 0.6137724
cg00000948 0.7984713

Total number of rows: 485577

Table truncated, full table size 10022 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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