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Sample GSM1500966 Query DataSets for GSM1500966
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17362
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17362
Sex: male
dna.extraction.method: AllPrep
age: 43
dnamage: 78.20186243
ageaccelerationresidualbasedontrainingandtestdata: 31.45825396
bmi: 61.5
diseasestatus: NAFLD
nafldactivityscore: 2
liversteatosis: 2
liverinflammation: 0
fibrosis: 1
nas.ballooning: 0
dnamageadjustedagebmi: 27.84008992
dnamageadjustedagebmigender: 25.56606975
smokingstatus: yes
smokingpackyears: 67.5
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2696733
cg00000108 0.8606957
cg00000109 0.8137187
cg00000165 0.1711511
cg00000236 0.8150397
cg00000289 0.5415404
cg00000292 0.619451
cg00000321 0.2282775
cg00000363 0.1837383
cg00000622 0.01483748
cg00000658 0.7621855
cg00000714 0.1173729
cg00000721 0.8863686
cg00000734 0.0632365
cg00000769 0.06512573
cg00000807 0.6704991
cg00000884 0.8234067
cg00000905 0.09667236
cg00000924 0.5057803
cg00000948 0.8046036

Total number of rows: 485577

Table truncated, full table size 10042 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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