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Sample GSM1500965 Query DataSets for GSM1500965
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17342
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17342
Sex: female
dna.extraction.method: AllPrep
age: 34
dnamage: 37.77382375
ageaccelerationresidualbasedontrainingandtestdata: -3.923934467
bmi: 44.6
diseasestatus: NAFLD
nafldactivityscore: 3
liversteatosis: 3
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -4.081746531
dnamageadjustedagebmigender: -2.350463806
smokingstatus: yes
smokingpackyears: 9.8
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.312529
cg00000108 0.4943814
cg00000109 0.7704784
cg00000165 0.1840246
cg00000236 0.8245801
cg00000289 0.623464
cg00000292 0.6419117
cg00000321 0.2364773
cg00000363 0.5960998
cg00000622 0.01581768
cg00000658 0.7705401
cg00000714 0.1918745
cg00000721 0.8999108
cg00000734 0.07698362
cg00000769 0.05874584
cg00000807 0.6480688
cg00000884 0.8001662
cg00000905 0.07603312
cg00000924 0.4480379
cg00000948 0.8579628

Total number of rows: 485577

Table truncated, full table size 10039 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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