GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1500964 Query DataSets for GSM1500964
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17282
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17282
Sex: male
dna.extraction.method: AllPrep
age: 40
dnamage: 48.88146645
ageaccelerationresidualbasedontrainingandtestdata: 3.819808063
bmi: 64.3
diseasestatus: NASH
nafldactivityscore: 5
liversteatosis: 3
liverinflammation: 1
fibrosis: 0
nas.ballooning: 1
dnamageadjustedagebmi: -0.060781027
dnamageadjustedagebmigender: -2.340719689
smokingstatus: no
smokingpackyears: 42
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2590964
cg00000108 0.4641118
cg00000109 0.8080605
cg00000165 0.1708717
cg00000236 0.7802252
cg00000289 0.6438802
cg00000292 0.6083475
cg00000321 0.3016407
cg00000363 0.6110277
cg00000622 0.02515957
cg00000658 0.7689525
cg00000714 0.163733
cg00000721 0.9028053
cg00000734 0.08563811
cg00000769 0.08848222
cg00000807 0.6229342
cg00000884 0.7749563
cg00000905 0.07967085
cg00000924 0.4839597
cg00000948 0.8436847

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap