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Sample GSM1500963 Query DataSets for GSM1500963
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17072
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17072
Sex: male
dna.extraction.method: AllPrep
age: 38
dnamage: 52.62652435
ageaccelerationresidualbasedontrainingandtestdata: 8.686166022
bmi: 60.7
diseasestatus: NAFLD
nafldactivityscore: 3
liversteatosis: 2
liverinflammation: 0
fibrosis: 1
nas.ballooning: 1
dnamageadjustedagebmi: 5.548427753
dnamageadjustedagebmigender: 3.262319335
smokingstatus: no
smokingpackyears: 12.4
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2626645
cg00000108 0.445778
cg00000109 0.8137594
cg00000165 0.2050828
cg00000236 0.8408746
cg00000289 0.5881836
cg00000292 0.6288332
cg00000321 0.2273346
cg00000363 0.6011477
cg00000622 0.02797232
cg00000658 0.7772851
cg00000714 0.1192897
cg00000721 0.9174271
cg00000734 0.07463583
cg00000769 0.07656844
cg00000807 0.6547519
cg00000884 0.786706
cg00000905 0.07751002
cg00000924 0.4601051
cg00000948 0.8773556

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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