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Sample GSM1500962 Query DataSets for GSM1500962
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a17062
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a17062
Sex: male
dna.extraction.method: AllPrep
age: 41
dnamage: 41.32311955
ageaccelerationresidualbasedontrainingandtestdata: -4.299188866
bmi: 63.3
diseasestatus: NAFLD
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 0
nas.ballooning: NA
dnamageadjustedagebmi: -8.081110245
dnamageadjustedagebmigender: -10.3591032
smokingstatus: yes
smokingpackyears: 23
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.297082
cg00000108 0.9147041
cg00000109 0.79277
cg00000165 0.5577676
cg00000236 0.8433155
cg00000289 0.5816861
cg00000292 0.7505559
cg00000321 0.463508
cg00000363 0.5424668
cg00000622 0.028021
cg00000658 0.7484663
cg00000714 0.1624658
cg00000721 0.8754371
cg00000734 0.07055779
cg00000769 0.07920837
cg00000807 0.6906711
cg00000884 0.7367566
cg00000905 0.07758758
cg00000924 0.3899189
cg00000948 0.6313477

Total number of rows: 485577

Table truncated, full table size 10026 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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