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Sample GSM1500961 Query DataSets for GSM1500961
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a16f92
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a16f92
Sex: female
dna.extraction.method: AllPrep
age: 77
dnamage: 47.53220013
ageaccelerationresidualbasedontrainingandtestdata: -18.27350929
bmi: 14.8
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -16.40476307
dnamageadjustedagebmigender: -14.5844445
smokingstatus: no
smokingpackyears: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3054809
cg00000108 0.4084558
cg00000109 0.8205281
cg00000165 0.1787165
cg00000236 0.8079707
cg00000289 0.5771693
cg00000292 0.6459932
cg00000321 0.2143586
cg00000363 0.6330819
cg00000622 0.02537643
cg00000658 0.7600523
cg00000714 0.1742197
cg00000721 0.903877
cg00000734 0.07181109
cg00000769 0.06655879
cg00000807 0.6764655
cg00000884 0.7916628
cg00000905 0.09512028
cg00000924 0.4856359
cg00000948 0.8385326

Total number of rows: 485577

Table truncated, full table size 10028 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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