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Sample GSM1500960 Query DataSets for GSM1500960
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a16ec2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a16ec2
Sex: female
dna.extraction.method: AllPrep
age: 71
dnamage: 61.102477
ageaccelerationresidualbasedontrainingandtestdata: -1.339332254
bmi: 21.7
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -0.213693666
dnamageadjustedagebmigender: 1.595316815
smokingstatus: no
smokingpackyears: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3416086
cg00000108 0.5155969
cg00000109 0.8092293
cg00000165 0.2102489
cg00000236 0.8019279
cg00000289 0.633759
cg00000292 0.6287178
cg00000321 0.3101532
cg00000363 0.6088018
cg00000622 0.02646007
cg00000658 0.7607673
cg00000714 0.1573761
cg00000721 0.8910832
cg00000734 0.08699127
cg00000769 0.07684612
cg00000807 0.6640849
cg00000884 0.7805627
cg00000905 0.08246493
cg00000924 0.5288714
cg00000948 0.8590858

Total number of rows: 485577

Table truncated, full table size 10019 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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