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Sample GSM1500958 Query DataSets for GSM1500958
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a16692
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a16692
Sex: male
dna.extraction.method: AllPrep
age: 41
dnamage: 43.05171211
ageaccelerationresidualbasedontrainingandtestdata: -2.570596302
bmi: 23.8
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 0.279153134
dnamageadjustedagebmigender: -2.014910241
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2838037
cg00000108 0.3748684
cg00000109 0.8606102
cg00000165 0.1976943
cg00000236 0.8157775
cg00000289 0.60395
cg00000292 0.6214073
cg00000321 0.2281892
cg00000363 0.7198284
cg00000622 0.01409042
cg00000658 0.804895
cg00000714 0.1290998
cg00000721 0.9098985
cg00000734 0.0700257
cg00000769 0.07737415
cg00000807 0.7039127
cg00000884 0.8416106
cg00000905 0.07165197
cg00000924 0.4620054
cg00000948 0.8606532

Total number of rows: 485577

Table truncated, full table size 10045 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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