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Sample GSM1500957 Query DataSets for GSM1500957
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a16572
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a16572
Sex: female
dna.extraction.method: AllPrep
age: 58
dnamage: 50.44797163
ageaccelerationresidualbasedontrainingandtestdata: -4.705387255
bmi: 24.6
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -3.166735863
dnamageadjustedagebmigender: -1.387128742
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3707597
cg00000108 0.4950918
cg00000109 0.8035414
cg00000165 0.209111
cg00000236 0.7776725
cg00000289 0.660257
cg00000292 0.6772672
cg00000321 0.2932432
cg00000363 0.5895231
cg00000622 0.0219506
cg00000658 0.7509202
cg00000714 0.1689691
cg00000721 0.8865528
cg00000734 0.08306447
cg00000769 0.07355497
cg00000807 0.6660815
cg00000884 0.7912188
cg00000905 0.1058197
cg00000924 0.5026584
cg00000948 0.8539817

Total number of rows: 485577

Table truncated, full table size 10018 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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