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Sample GSM1500956 Query DataSets for GSM1500956
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a16502
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a16502
Sex: female
dna.extraction.method: AllPrep
age: 33
dnamage: 42.41697793
ageaccelerationresidualbasedontrainingandtestdata: 1.27986974
bmi: 66.9
diseasestatus: NAFLD
nafldactivityscore: 3
liversteatosis: 3
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -2.552675563
dnamageadjustedagebmigender: -0.814672724
smokingstatus: no
smokingpackyears: 16
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2693172
cg00000108 0.5124856
cg00000109 0.8045662
cg00000165 0.1775288
cg00000236 0.8107739
cg00000289 0.5994233
cg00000292 0.6585676
cg00000321 0.258314
cg00000363 0.5964466
cg00000622 0.01361812
cg00000658 0.7626113
cg00000714 0.1339236
cg00000721 0.9049412
cg00000734 0.07217591
cg00000769 0.07162318
cg00000807 0.6478536
cg00000884 0.8148679
cg00000905 0.07034263
cg00000924 0.5042273
cg00000948 0.8640102

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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