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Sample GSM1500955 Query DataSets for GSM1500955
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a162b2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a162b2
Sex: male
dna.extraction.method: AllPrep
age: 43
dnamage: 47.38532119
ageaccelerationresidualbasedontrainingandtestdata: 0.641712721
bmi: 59.3
diseasestatus: NASH
nafldactivityscore: 6
liversteatosis: NA
liverinflammation: NA
fibrosis: 2
nas.ballooning: NA
dnamageadjustedagebmi: -2.607092436
dnamageadjustedagebmigender: -4.882007663
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3141618
cg00000108 0.5826748
cg00000109 0.8207543
cg00000165 0.198572
cg00000236 0.7738123
cg00000289 0.5978584
cg00000292 0.6579278
cg00000321 0.2627732
cg00000363 0.4742825
cg00000622 0.02673082
cg00000658 0.7592431
cg00000714 0.1621388
cg00000721 0.9071198
cg00000734 0.0786696
cg00000769 0.07929268
cg00000807 0.5993368
cg00000884 0.8067656
cg00000905 0.06385774
cg00000924 0.4971868
cg00000948 0.8536654

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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