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Sample GSM1500954 Query DataSets for GSM1500954
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a16252
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a16252
Sex: male
dna.extraction.method: AllPrep
age: 35
dnamage: 39.0294929
ageaccelerationresidualbasedontrainingandtestdata: -3.228915343
bmi: 25.9
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -0.31639961
dnamageadjustedagebmigender: -2.623723938
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2962959
cg00000108 0.386806
cg00000109 0.8492401
cg00000165 0.1672128
cg00000236 0.820344
cg00000289 0.6501608
cg00000292 0.6372575
cg00000321 0.2207205
cg00000363 0.6940218
cg00000622 0.02037201
cg00000658 0.7680627
cg00000714 0.185169
cg00000721 0.8956061
cg00000734 0.06645021
cg00000769 0.07819639
cg00000807 0.6900921
cg00000884 0.8447196
cg00000905 0.07725448
cg00000924 0.4692937
cg00000948 0.882258

Total number of rows: 485577

Table truncated, full table size 10043 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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