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Sample GSM1500953 Query DataSets for GSM1500953
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a16232
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a16232
Sex: male
dna.extraction.method: AllPrep
age: 41
dnamage: 56.19898183
ageaccelerationresidualbasedontrainingandtestdata: 10.57667342
bmi: 52
diseasestatus: NAFLD
nafldactivityscore: 2
liversteatosis: 2
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 8.691913561
dnamageadjustedagebmigender: 6.409323247
smokingstatus: yes
smokingpackyears: 21.3
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2428761
cg00000108 0.420552
cg00000109 0.8482195
cg00000165 0.172285
cg00000236 0.727432
cg00000289 0.5275903
cg00000292 0.6877133
cg00000321 0.219227
cg00000363 0.6019274
cg00000622 0.01103789
cg00000658 0.7950457
cg00000714 0.1540499
cg00000721 0.8806621
cg00000734 0.06443179
cg00000769 0.0547906
cg00000807 0.6294543
cg00000884 0.7923177
cg00000905 0.06145397
cg00000924 0.4635431
cg00000948 0.8602512

Total number of rows: 485577

Table truncated, full table size 10031 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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