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Sample GSM1500952 Query DataSets for GSM1500952
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a15fc2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a15fc2
Sex: female
dna.extraction.method: AllPrep
age: 49
dnamage: 45.36195971
ageaccelerationresidualbasedontrainingandtestdata: -4.74554893
bmi: 51.2
diseasestatus: NAFLD
nafldactivityscore: 3
liversteatosis: 3
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -7.049777982
dnamageadjustedagebmigender: -5.280521747
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2892954
cg00000108 0.4672537
cg00000109 0.8232921
cg00000165 0.1789137
cg00000236 0.8217496
cg00000289 0.726522
cg00000292 0.6429021
cg00000321 0.2533477
cg00000363 0.6357916
cg00000622 0.01997256
cg00000658 0.7776335
cg00000714 0.147055
cg00000721 0.9330054
cg00000734 0.0781258
cg00000769 0.07118412
cg00000807 0.6460319
cg00000884 0.8162287
cg00000905 0.0890456
cg00000924 0.4790066
cg00000948 0.8962321

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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