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Sample GSM1500951 Query DataSets for GSM1500951
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a15e92
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a15e92
Sex: male
dna.extraction.method: AllPrep
age: 77
dnamage: 65.26710289
ageaccelerationresidualbasedontrainingandtestdata: -0.53860653
bmi: 25.1
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -0.399131442
dnamageadjustedagebmigender: -2.607973939
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3555574
cg00000108 0.5105674
cg00000109 0.8418552
cg00000165 0.2473052
cg00000236 0.7868412
cg00000289 0.6429499
cg00000292 0.7210664
cg00000321 0.2506559
cg00000363 0.5721801
cg00000622 0.01388106
cg00000658 0.7610229
cg00000714 0.1533158
cg00000721 0.873167
cg00000734 0.05649197
cg00000769 0.0755845
cg00000807 0.6387362
cg00000884 0.810374
cg00000905 0.09120187
cg00000924 0.4527331
cg00000948 0.8493988

Total number of rows: 485577

Table truncated, full table size 10035 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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