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Sample GSM1500950 Query DataSets for GSM1500950
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a15c62
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a15c62
Sex: male
dna.extraction.method: AllPrep
age: 32
dnamage: 39.29215725
ageaccelerationresidualbasedontrainingandtestdata: -1.284300912
bmi: 57.5
diseasestatus: NAFLD
nafldactivityscore: 4
liversteatosis: 3
liverinflammation: 0
fibrosis: 0
nas.ballooning: 1
dnamageadjustedagebmi: -3.469453762
dnamageadjustedagebmigender: -5.770979416
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3178012
cg00000108 0.4953248
cg00000109 0.8318229
cg00000165 0.1663503
cg00000236 0.7635143
cg00000289 0.6279664
cg00000292 0.6996625
cg00000321 0.2833914
cg00000363 0.6255832
cg00000622 0.02666687
cg00000658 0.7603562
cg00000714 0.1575124
cg00000721 0.9132922
cg00000734 0.07259935
cg00000769 0.08767215
cg00000807 0.6645772
cg00000884 0.7777423
cg00000905 0.06825837
cg00000924 0.4747704
cg00000948 0.8694448

Total number of rows: 485577

Table truncated, full table size 10027 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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