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Sample GSM1500949 Query DataSets for GSM1500949
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a157c2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a157c2
Sex: female
dna.extraction.method: AllPrep
age: 75
dnamage: 64.02008763
ageaccelerationresidualbasedontrainingandtestdata: -0.664321733
bmi: 25
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -0.369612226
dnamageadjustedagebmigender: 1.450151068
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3323199
cg00000108 0.536038
cg00000109 0.842877
cg00000165 0.2213853
cg00000236 0.8101986
cg00000289 0.5941467
cg00000292 0.6308135
cg00000321 0.3186221
cg00000363 0.5562454
cg00000622 0.02548524
cg00000658 0.7619212
cg00000721 0.9062344
cg00000734 0.08949902
cg00000769 0.08497478
cg00000807 0.6485863
cg00000884 0.7768485
cg00000905 0.07105408
cg00000924 0.4455777
cg00000948 0.8580572

Total number of rows: 485577

Table truncated, full table size 10018 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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