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Sample GSM1500948 Query DataSets for GSM1500948
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a155d2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a155d2
Sex: male
dna.extraction.method: AllPrep
age: 77
dnamage: 63.64249327
ageaccelerationresidualbasedontrainingandtestdata: -2.163216146
bmi: 22.5
diseasestatus: Control
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -1.587226017
dnamageadjustedagebmigender: -3.797126314
smokingstatus: no
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2816453
cg00000108 0.3922778
cg00000109 0.8733653
cg00000165 0.215538
cg00000236 0.7857141
cg00000289 0.640635
cg00000292 0.5896319
cg00000321 0.2012119
cg00000363 0.7431669
cg00000622 0.01568759
cg00000658 0.7740551
cg00000714 0.1607755
cg00000721 0.8897265
cg00000734 0.07248419
cg00000769 0.06053688
cg00000807 0.710935
cg00000884 0.8439999
cg00000905 0.06272234
cg00000924 0.4842981
cg00000948 0.875476

Total number of rows: 485577

Table truncated, full table size 10041 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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