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Sample GSM1500946 Query DataSets for GSM1500946
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a151c2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a151c2
Sex: female
dna.extraction.method: AllPrep
age: 46
dnamage: 46.37000173
ageaccelerationresidualbasedontrainingandtestdata: -2.055556822
bmi: 21.1
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0.5
nas.ballooning: 0
dnamageadjustedagebmi: 0.901383247
dnamageadjustedagebmigender: 2.651335747
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3552057
cg00000108 0.3912479
cg00000109 0.8492589
cg00000165 0.1636684
cg00000236 0.8058711
cg00000289 0.5798846
cg00000292 0.6607011
cg00000321 0.1862066
cg00000363 0.7096583
cg00000622 0.01206362
cg00000658 0.7888581
cg00000714 0.1892383
cg00000721 0.9146277
cg00000734 0.06970385
cg00000769 0.0717239
cg00000807 0.7328288
cg00000884 0.8371049
cg00000905 0.07471283
cg00000924 0.4610965
cg00000948 0.86821

Total number of rows: 485577

Table truncated, full table size 10040 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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