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Sample GSM1500945 Query DataSets for GSM1500945
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a150f2
Sample type genomic
 
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a150f2
Sex: male
dna.extraction.method: AllPrep
age: 62
dnamage: 62.67812572
ageaccelerationresidualbasedontrainingandtestdata: 5.282166726
bmi: 30.2
diseasestatus: HealthyObese
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 5.603741117
dnamageadjustedagebmigender: 3.361685211
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
 
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
ID_REF
VALUE Average Beta (no special processing)

Data table
ID_REF VALUE
cg00000029 0.2758914
cg00000108 0.904766
cg00000109 0.8107952
cg00000165 0.1879397
cg00000236 0.8233919
cg00000289 0.5757963
cg00000292 0.586464
cg00000321 0.2426329
cg00000363 0.2413597
cg00000622 0.01611103
cg00000658 0.74801
cg00000714 0.1274479
cg00000721 0.9290081
cg00000734 0.06637449
cg00000769 0.06733059
cg00000807 0.7245494
cg00000884 0.7986094
cg00000905 0.08114561
cg00000924 0.5007397
cg00000948 0.8340597

Total number of rows: 485577

Table truncated, full table size 10038 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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