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Sample GSM1500944 Query DataSets for GSM1500944
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a14f22
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a14f22
Sex: female
dna.extraction.method: AllPrep
age: 57
dnamage: 52.38965715
ageaccelerationresidualbasedontrainingandtestdata: -2.20305171
bmi: 22.2
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 0
nas.ballooning: NA
dnamageadjustedagebmi: -0.192240668
dnamageadjustedagebmigender: 1.584037467
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2711537
cg00000108 0.3949338
cg00000109 0.8076447
cg00000165 0.1748628
cg00000236 0.7878156
cg00000289 0.6255701
cg00000292 0.6277706
cg00000321 0.2629498
cg00000363 0.6884283
cg00000622 0.02419354
cg00000658 0.7890939
cg00000714 0.1466966
cg00000721 0.8947325
cg00000734 0.07415333
cg00000769 0.07445767
cg00000807 0.6974019
cg00000884 0.8225579
cg00000905 0.08366498
cg00000924 0.4441618
cg00000948 0.8430721

Total number of rows: 485577

Table truncated, full table size 10038 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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