GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1500943 Query DataSets for GSM1500943
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a14f02
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a14f02
Sex: female
dna.extraction.method: AllPrep
age: 63
dnamage: 66.53282395
ageaccelerationresidualbasedontrainingandtestdata: 8.576214926
bmi: 34.4
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 1
nas.ballooning: NA
dnamageadjustedagebmi: 8.123426945
dnamageadjustedagebmigender: 9.918783933
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3139542
cg00000108 0.4634979
cg00000109 0.8833685
cg00000165 0.2152842
cg00000236 0.8113263
cg00000289 0.6687117
cg00000292 0.6286851
cg00000321 0.3373498
cg00000363 0.6718833
cg00000622 0.020557
cg00000658 0.7640653
cg00000714 0.163021
cg00000721 0.8644146
cg00000734 0.08307163
cg00000769 0.07790694
cg00000807 0.7008137
cg00000884 0.8424368
cg00000905 0.05726311
cg00000924 0.4994001
cg00000948 0.8857023

Total number of rows: 485577

Table truncated, full table size 10024 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap