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Sample GSM1500942 Query DataSets for GSM1500942
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a14ee2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a14ee2
Sex: male
dna.extraction.method: AllPrep
age: 44
dnamage: 53.59750141
ageaccelerationresidualbasedontrainingandtestdata: 6.293242917
bmi: 43.9
diseasestatus: HealthyObese
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 5.560727237
dnamageadjustedagebmigender: 3.281899134
smokingstatus: no
smokingpackyears: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2977106
cg00000108 0.4572452
cg00000109 0.8759401
cg00000165 0.1916658
cg00000236 0.7734265
cg00000289 0.6791685
cg00000292 0.6210669
cg00000321 0.2667153
cg00000363 0.5945781
cg00000622 0.02367111
cg00000658 0.7951906
cg00000714 0.1507618
cg00000721 0.9006063
cg00000734 0.07351778
cg00000769 0.0694566
cg00000807 0.6381603
cg00000884 0.8350431
cg00000905 0.06506348
cg00000924 0.4666554
cg00000948 0.8647071

Total number of rows: 485577

Table truncated, full table size 10026 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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