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Sample GSM1500941 Query DataSets for GSM1500941
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a14e52
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a14e52
Sex: female
dna.extraction.method: AllPrep
age: 55
dnamage: 53.30792611
ageaccelerationresidualbasedontrainingandtestdata: -0.163482689
bmi: 40.7
diseasestatus: NAFLD
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -1.120198674
dnamageadjustedagebmigender: 0.658901005
smokingstatus: no
smokingpackyears: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2757109
cg00000108 0.4048721
cg00000109 0.8209501
cg00000165 0.233357
cg00000236 0.7595447
cg00000289 0.6020368
cg00000292 0.6423883
cg00000321 0.2260161
cg00000363 0.6750246
cg00000622 0.02159113
cg00000658 0.7819878
cg00000714 0.1299142
cg00000721 0.8944689
cg00000734 0.08017662
cg00000769 0.07135566
cg00000807 0.6969529
cg00000884 0.79427
cg00000905 0.09112794
cg00000924 0.6228913
cg00000948 0.8698218

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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