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Sample GSM1500939 Query DataSets for GSM1500939
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a14992
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a14992
Sex: female
dna.extraction.method: AllPrep
age: 46
dnamage: 54.3868176
ageaccelerationresidualbasedontrainingandtestdata: 5.961259051
bmi: 36.9
diseasestatus: NAFLD
nafldactivityscore: 2
liversteatosis: 2
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 6.265530794
dnamageadjustedagebmigender: 8.021911463
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3219295
cg00000108 0.4061649
cg00000109 0.8361889
cg00000165 0.2124981
cg00000236 0.7633632
cg00000289 0.6469085
cg00000292 0.6357229
cg00000321 0.2487878
cg00000363 0.6732736
cg00000622 0.01503304
cg00000658 0.8003228
cg00000714 0.1560945
cg00000721 0.8788732
cg00000734 0.07366985
cg00000769 0.06464183
cg00000807 0.6879706
cg00000884 0.8331506
cg00000905 0.09634116
cg00000924 0.4756481
cg00000948 0.8864205

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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