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Sample GSM1500938 Query DataSets for GSM1500938
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a14772
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a14772
Sex: male
dna.extraction.method: AllPrep
age: 57
dnamage: 56.6836288
ageaccelerationresidualbasedontrainingandtestdata: 2.090919937
bmi: 46.6
diseasestatus: HealthyObese
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 0.00520521
dnamageadjustedagebmigender: -2.241941194
smokingstatus: no
smokingpackyears: 129.5
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.306401
cg00000108 0.3982057
cg00000109 0.8632615
cg00000165 0.1971919
cg00000236 0.803785
cg00000289 0.6659529
cg00000292 0.6911513
cg00000321 0.2421426
cg00000363 0.6610916
cg00000622 0.01366842
cg00000658 0.810314
cg00000714 0.1847096
cg00000721 0.908179
cg00000734 0.07479892
cg00000769 0.06390291
cg00000807 0.6994187
cg00000884 0.8451447
cg00000905 0.08451546
cg00000924 0.4949029
cg00000948 0.8688902

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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