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Sample GSM1500937 Query DataSets for GSM1500937
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a14482
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a14482
Sex: female
dna.extraction.method: AllPrep
age: 48
dnamage: 38.23120505
ageaccelerationresidualbasedontrainingandtestdata: -11.31565356
bmi: 23.2
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 1
nas.ballooning: NA
dnamageadjustedagebmi: -8.849728712
dnamageadjustedagebmigender: -7.094216725
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3198867
cg00000108 0.4055167
cg00000109 0.8692648
cg00000165 0.2113403
cg00000236 0.8283429
cg00000289 0.5988113
cg00000292 0.677493
cg00000321 0.2761955
cg00000363 0.6909498
cg00000622 0.02081823
cg00000658 0.7711875
cg00000714 0.173414
cg00000721 0.909592
cg00000734 0.06320323
cg00000769 0.0739128
cg00000807 0.7193813
cg00000884 0.8191514
cg00000905 0.07874082
cg00000924 0.4897121
cg00000948 0.883426

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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