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Sample GSM1500934 Query DataSets for GSM1500934
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a141b2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a141b2
Sex: female
dna.extraction.method: AllPrep
age: 48
dnamage: 52.68650982
ageaccelerationresidualbasedontrainingandtestdata: 3.139651213
bmi: 23.9
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 3.5
nas.ballooning: NA
dnamageadjustedagebmi: 5.488052781
dnamageadjustedagebmigender: 7.24384956
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.4776781
cg00000108 0.5088349
cg00000109 0.8534477
cg00000165 0.1947052
cg00000236 0.7988922
cg00000289 0.6282228
cg00000292 0.6205006
cg00000321 0.2811227
cg00000363 0.6403778
cg00000622 0.02313522
cg00000658 0.7586471
cg00000714 0.1763373
cg00000721 0.9121584
cg00000734 0.08149172
cg00000769 0.07038973
cg00000807 0.6882992
cg00000884 0.8197643
cg00000905 0.08430191
cg00000924 0.4939595
cg00000948 0.8626501

Total number of rows: 485577

Table truncated, full table size 10030 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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