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Sample GSM1500933 Query DataSets for GSM1500933
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a13f42
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a13f42
Sex: male
dna.extraction.method: AllPrep
age: 53
dnamage: 52.57859267
ageaccelerationresidualbasedontrainingandtestdata: 0.228483918
bmi: 25.4
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 1
nas.ballooning: NA
dnamageadjustedagebmi: 1.978936438
dnamageadjustedagebmigender: -0.286245325
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.369132
cg00000108 0.4896176
cg00000109 0.8192111
cg00000165 0.1949731
cg00000236 0.8256288
cg00000289 0.6584847
cg00000292 0.7390639
cg00000321 0.2456019
cg00000363 0.6771529
cg00000622 0.02330492
cg00000658 0.7745268
cg00000714 0.1698954
cg00000721 0.9142138
cg00000734 0.07185028
cg00000769 0.07088707
cg00000807 0.7120647
cg00000884 0.8457983
cg00000905 0.08947916
cg00000924 0.601245
cg00000948 0.9008426

Total number of rows: 485577

Table truncated, full table size 10032 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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