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Sample GSM1500932 Query DataSets for GSM1500932
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a13eb2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a13eb2
Sex: male
dna.extraction.method: AllPrep
age: 61
dnamage: 53.92645937
ageaccelerationresidualbasedontrainingandtestdata: -2.9088496
bmi: 36.3
diseasestatus: HealthyObese
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0.5
nas.ballooning: 0
dnamageadjustedagebmi: -3.542183962
dnamageadjustedagebmigender: -5.784110662
smokingstatus: yes
smokingpackyears: 9.9
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3437189
cg00000108 0.440702
cg00000109 0.8303131
cg00000165 0.1635005
cg00000236 0.806028
cg00000289 0.662504
cg00000292 0.6503237
cg00000321 0.2351825
cg00000363 0.6397253
cg00000622 0.01890071
cg00000658 0.7975386
cg00000714 0.1748346
cg00000721 0.8951121
cg00000734 0.07372107
cg00000769 0.06619153
cg00000807 0.6396062
cg00000884 0.8119012
cg00000905 0.07315868
cg00000924 0.4899078
cg00000948 0.8547369

Total number of rows: 485577

Table truncated, full table size 10010 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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