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Sample GSM1500931 Query DataSets for GSM1500931
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a13c82
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a13c82
Sex: male
dna.extraction.method: AllPrep
age: 64
dnamage: 52.08257401
ageaccelerationresidualbasedontrainingandtestdata: -6.43468504
bmi: 24.9
diseasestatus: Control
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0.5
nas.ballooning: 0
dnamageadjustedagebmi: -5.361736907
dnamageadjustedagebmigender: -7.601243987
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2737846
cg00000108 0.4802952
cg00000109 0.8501073
cg00000165 0.1917721
cg00000236 0.7991976
cg00000289 0.6620117
cg00000292 0.6962711
cg00000321 0.2705676
cg00000363 0.6273621
cg00000622 0.0244957
cg00000658 0.7373258
cg00000714 0.1397638
cg00000721 0.8778716
cg00000734 0.07356394
cg00000769 0.09209121
cg00000807 0.6723285
cg00000884 0.8287281
cg00000905 0.0735336
cg00000924 0.4892283
cg00000948 0.8358046

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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