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Sample GSM1500930 Query DataSets for GSM1500930
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a13c52
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a13c52
Sex: female
dna.extraction.method: AllPrep
age: 81
dnamage: 69.51075925
ageaccelerationresidualbasedontrainingandtestdata: 1.462449717
bmi: 26
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 1.173932686
dnamageadjustedagebmigender: 3.008218156
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3598067
cg00000108 0.3779727
cg00000109 0.8384956
cg00000165 0.2110566
cg00000236 0.8148324
cg00000289 0.6941282
cg00000292 0.696587
cg00000321 0.2526981
cg00000363 0.67414
cg00000622 0.02890556
cg00000658 0.7635323
cg00000714 0.1954119
cg00000721 0.9045974
cg00000734 0.08852124
cg00000769 0.06467777
cg00000807 0.7225082
cg00000884 0.7973354
cg00000905 0.08606612
cg00000924 0.5144454
cg00000948 0.8438297

Total number of rows: 485577

Table truncated, full table size 10013 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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