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Sample GSM1500929 Query DataSets for GSM1500929
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a13c32
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a13c32
Sex: female
dna.extraction.method: AllPrep
age: 53
dnamage: 45.41937289
ageaccelerationresidualbasedontrainingandtestdata: -6.930735859
bmi: 25.4
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 1
nas.ballooning: NA
dnamageadjustedagebmi: -5.18028334
dnamageadjustedagebmigender: -3.412113516
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.374678
cg00000108 0.4157067
cg00000109 0.7652326
cg00000165 0.1586329
cg00000236 0.8100396
cg00000289 0.6295305
cg00000292 0.6719913
cg00000321 0.2413905
cg00000363 0.7091134
cg00000622 0.01564043
cg00000658 0.7802838
cg00000714 0.15834
cg00000721 0.8970793
cg00000734 0.07200239
cg00000769 0.06552653
cg00000807 0.7129388
cg00000884 0.8123431
cg00000905 0.07376465
cg00000924 0.4957169
cg00000948 0.8716998

Total number of rows: 485577

Table truncated, full table size 10038 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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