GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1500928 Query DataSets for GSM1500928
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a13c02
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a13c02
Sex: female
dna.extraction.method: AllPrep
age: 38
dnamage: 37.84552684
ageaccelerationresidualbasedontrainingandtestdata: -6.094831488
bmi: 19.1
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -2.248329101
dnamageadjustedagebmigender: -0.518010733
smokingstatus: yes
smokingpackyears: 10
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3433611
cg00000108 0.4187328
cg00000109 0.8101384
cg00000165 0.19052
cg00000236 0.7749117
cg00000289 0.6352392
cg00000292 0.65481
cg00000321 0.233461
cg00000363 0.6567981
cg00000622 0.02859194
cg00000658 0.7437578
cg00000714 0.1335254
cg00000721 0.914134
cg00000734 0.07709814
cg00000769 0.06013277
cg00000807 0.6372994
cg00000884 0.7772392
cg00000905 0.0882211
cg00000924 0.4969898
cg00000948 0.8431664

Total number of rows: 485577

Table truncated, full table size 10024 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap