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Sample GSM1500927 Query DataSets for GSM1500927
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a13992
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a13992
Sex: female
dna.extraction.method: AllPrep
age: 49
dnamage: 47.65977682
ageaccelerationresidualbasedontrainingandtestdata: -2.447731818
bmi: 36.2
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 1
nas.ballooning: NA
dnamageadjustedagebmi: -2.233604864
dnamageadjustedagebmigender: -0.470451322
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3826148
cg00000108 0.519088
cg00000109 0.836931
cg00000165 0.1380213
cg00000236 0.8552828
cg00000289 0.6269085
cg00000292 0.6711673
cg00000321 0.2931698
cg00000363 0.6031961
cg00000622 0.01601462
cg00000658 0.7707596
cg00000714 0.1845872
cg00000721 0.8885813
cg00000734 0.06578624
cg00000769 0.07678025
cg00000807 0.6798695
cg00000884 0.8203594
cg00000905 0.06759438
cg00000924 0.4635004
cg00000948 0.8767794

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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