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Sample GSM1500926 Query DataSets for GSM1500926
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a13962
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a13962
Sex: female
dna.extraction.method: AllPrep
age: 48
dnamage: 45.87029193
ageaccelerationresidualbasedontrainingandtestdata: -3.67656668
bmi: 29.8
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 2
nas.ballooning: NA
dnamageadjustedagebmi: -2.318718474
dnamageadjustedagebmigender: -0.560521302
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3659516
cg00000108 0.4263734
cg00000109 0.8518734
cg00000165 0.1891108
cg00000236 0.771902
cg00000289 0.5679848
cg00000292 0.6898215
cg00000321 0.2593256
cg00000363 0.6430004
cg00000622 0.01757129
cg00000658 0.744669
cg00000714 0.1340989
cg00000721 0.9099693
cg00000734 0.06357072
cg00000769 0.07104602
cg00000807 0.6823733
cg00000884 0.8420182
cg00000905 0.07606846
cg00000924 0.4897928
cg00000948 0.861258

Total number of rows: 485577

Table truncated, full table size 10033 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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