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Sample GSM1500925 Query DataSets for GSM1500925
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a121b2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a121b2
Sex: male
dna.extraction.method: AllPrep
age: 71
dnamage: 66.15826619
ageaccelerationresidualbasedontrainingandtestdata: 3.71645694
bmi: 30.1
diseasestatus: HealthyObese
nafldactivityscore: 1
liversteatosis: 1
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 3.431816164
dnamageadjustedagebmigender: 1.210892568
smokingstatus: no
smokingpackyears: 0
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.1075758
cg00000108 0.639282
cg00000109 0.7521253
cg00000165 0.620133
cg00000236 0.6025784
cg00000289 0.3477705
cg00000292 0.1815181
cg00000321 0.4003537
cg00000363 0.2203835
cg00000622 0.02318312
cg00000658 0.7348105
cg00000714 0.1877155
cg00000721 0.747166
cg00000734 0.07138127
cg00000769 0.07194515
cg00000807 0.8562929
cg00000884 0.6028802
cg00000905 0.3869868
cg00000924 0.5730019
cg00000948 0.6390561

Total number of rows: 485577

Table truncated, full table size 10022 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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