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Sample GSM1500924 Query DataSets for GSM1500924
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a120c2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a120c2
Sex: male
dna.extraction.method: AllPrep
age: 39
dnamage: 38.94482478
ageaccelerationresidualbasedontrainingandtestdata: -5.556183575
bmi: 27.1
diseasestatus: PSC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 1
nas.ballooning: NA
dnamageadjustedagebmi: -3.122027081
dnamageadjustedagebmigender: -5.419452975
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3363547
cg00000108 0.4353753
cg00000109 0.8698589
cg00000165 0.1560494
cg00000236 0.7994068
cg00000289 0.6215748
cg00000292 0.6583653
cg00000321 0.2087997
cg00000363 0.6794125
cg00000622 0.01731
cg00000658 0.7554099
cg00000714 0.1546825
cg00000721 0.8981571
cg00000734 0.07718763
cg00000769 0.07898603
cg00000807 0.6715122
cg00000884 0.8295649
cg00000905 0.07359403
cg00000924 0.4956054
cg00000948 0.8785126

Total number of rows: 485577

Table truncated, full table size 10045 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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