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Sample GSM1500923 Query DataSets for GSM1500923
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a11f52
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a11f52
Sex: female
dna.extraction.method: AllPrep
age: 59
dnamage: 59.51127912
ageaccelerationresidualbasedontrainingandtestdata: 3.797270203
bmi: 26.9
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: NA
liverinflammation: NA
fibrosis: NA
nas.ballooning: NA
dnamageadjustedagebmi: 4.880550984
dnamageadjustedagebmigender: 6.663446406
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3240726
cg00000108 0.4209414
cg00000109 0.7967332
cg00000165 0.1909952
cg00000236 0.7775568
cg00000289 0.5638042
cg00000292 0.6293108
cg00000321 0.2333502
cg00000363 0.683807
cg00000622 0.02730115
cg00000658 0.7688916
cg00000714 0.1842138
cg00000721 0.8685407
cg00000734 0.06369799
cg00000769 0.06399457
cg00000807 0.6902809
cg00000884 0.7274751
cg00000905 0.0949641
cg00000924 0.4409275
cg00000948 0.8338091

Total number of rows: 485577

Table truncated, full table size 10024 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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