GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1500922 Query DataSets for GSM1500922
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a11b22
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a11b22
Sex: male
dna.extraction.method: AllPrep
age: 77
dnamage: 59.79466304
ageaccelerationresidualbasedontrainingandtestdata: -6.011046382
bmi: 26.8
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -6.156984974
dnamageadjustedagebmigender: -8.365135833
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3284822
cg00000108 0.4232542
cg00000109 0.8178203
cg00000165 0.1945658
cg00000236 0.813531
cg00000289 0.6118275
cg00000292 0.7021733
cg00000321 0.2342502
cg00000363 0.6207712
cg00000622 0.007621801
cg00000658 0.7699666
cg00000714 0.1652575
cg00000721 0.8959547
cg00000734 0.06825941
cg00000769 0.05855818
cg00000807 0.72476
cg00000884 0.8179324
cg00000905 0.07320127
cg00000924 0.4770115
cg00000948 0.8737387

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap