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Sample GSM1500921 Query DataSets for GSM1500921
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a11a92
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a11a92
Sex: female
dna.extraction.method: AllPrep
age: 85
dnamage: 66.84763921
ageaccelerationresidualbasedontrainingandtestdata: -3.443270436
bmi: 23.7
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -3.622530305
dnamageadjustedagebmigender: -1.779770361
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3404218
cg00000108 0.3940206
cg00000109 0.7679558
cg00000165 0.243498
cg00000236 0.7660667
cg00000289 0.5782846
cg00000292 0.672957
cg00000321 0.203865
cg00000363 0.6111178
cg00000622 0.02776933
cg00000658 0.7347756
cg00000714 0.1739028
cg00000721 0.8953491
cg00000734 0.08246682
cg00000769 0.08383514
cg00000807 0.6976601
cg00000884 0.7830054
cg00000905 0.1123999
cg00000924 0.4415867
cg00000948 0.8146295

Total number of rows: 485577

Table truncated, full table size 10020 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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