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Sample GSM1500920 Query DataSets for GSM1500920
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a11972
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a11972
Sex: female
dna.extraction.method: AllPrep
age: 67
dnamage: 60.05615002
ageaccelerationresidualbasedontrainingandtestdata: -0.143059123
bmi: 25.6
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: 0.604697662
dnamageadjustedagebmigender: 2.405884623
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.2631559
cg00000108 0.346178
cg00000109 0.8725688
cg00000165 0.187457
cg00000236 0.8193275
cg00000289 0.6134689
cg00000292 0.70218
cg00000321 0.237973
cg00000363 0.7298703
cg00000622 0.0193005
cg00000658 0.7362267
cg00000714 0.1283819
cg00000721 0.9082649
cg00000734 0.06457855
cg00000769 0.0604572
cg00000807 0.7285661
cg00000884 0.8195226
cg00000905 0.08667096
cg00000924 0.4737022
cg00000948 0.8564106

Total number of rows: 485577

Table truncated, full table size 10034 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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