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Sample GSM1500919 Query DataSets for GSM1500919
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a11622
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a11622
Sex: male
dna.extraction.method: AllPrep
age: 67
dnamage: 60.50207625
ageaccelerationresidualbasedontrainingandtestdata: 0.302867107
bmi: 30.4
diseasestatus: PBC
nafldactivityscore: NA
liversteatosis: NA
liverinflammation: NA
fibrosis: 1.5
nas.ballooning: NA
dnamageadjustedagebmi: 0.244749969
dnamageadjustedagebmigender: -1.985461793
smokingstatus: NA
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3120891
cg00000108 0.4952276
cg00000109 0.8263519
cg00000165 0.2034709
cg00000236 0.8272432
cg00000289 0.6843145
cg00000292 0.6476954
cg00000321 0.261824
cg00000363 0.6395755
cg00000622 0.01099739
cg00000658 0.787782
cg00000714 0.1804102
cg00000721 0.9060391
cg00000734 0.08584526
cg00000769 0.07553562
cg00000807 0.681483
cg00000884 0.8192468
cg00000905 0.09652779
cg00000924 0.4777768
cg00000948 0.8392926

Total number of rows: 485577

Table truncated, full table size 10032 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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