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Sample GSM1500918 Query DataSets for GSM1500918
Status Public on Nov 03, 2014
Title genomic DNA from human liver of subject S11a115d2
Sample type genomic
Source name Liver
Organism Homo sapiens
Characteristics subjectid: S11a115d2
Sex: male
dna.extraction.method: AllPrep
age: 72
dnamage: 55.20160063
ageaccelerationresidualbasedontrainingandtestdata: -7.800858652
bmi: 26.9
diseasestatus: Control
nafldactivityscore: 0
liversteatosis: 0
liverinflammation: 0
fibrosis: 0
nas.ballooning: 0
dnamageadjustedagebmi: -7.617472836
dnamageadjustedagebmigender: -9.837345785
smokingstatus: no
smokingpackyears: NA
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label Cy3, Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA from human liver tissue
Data processing BeadStudio software v3.2.
Submission date Sep 09, 2014
Last update date Nov 03, 2014
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE61256 Obesity accelerates epigenetic aging of human liver
GSE61258 Human Liver Illumina Inf 450 DNA methylation data

Data table header descriptions
VALUE Average Beta (no special processing)

Data table
cg00000029 0.3262468
cg00000108 0.3739183
cg00000109 0.8483167
cg00000165 0.1646339
cg00000236 0.8006496
cg00000289 0.6654053
cg00000292 0.6535682
cg00000321 0.1829505
cg00000363 0.729179
cg00000622 0.01639984
cg00000658 0.787821
cg00000714 0.184182
cg00000721 0.9048195
cg00000734 0.06651367
cg00000769 0.07203194
cg00000807 0.7278295
cg00000884 0.8569461
cg00000905 0.09932209
cg00000924 0.4828454
cg00000948 0.84404

Total number of rows: 485577

Table truncated, full table size 10036 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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